Gallery

Source: https://github.com/li081766/shinyWGD/blob/main/vignettes/gallery.Rmd

1 Getting Started

This vignette provides the examples of output using the shinyWGD server or package.

2 K_sDist

2.1 Paralogous K_s age distribution

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2.2 Orthologous K_s age distribution

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2.3 Raletive rate correctiong

2.4 Phylo-K_s analysis

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3 Collinearity

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3.1 Intra-comparing alignment

3.1.1 Dot plot

3.1.2 Parallel-line plot

3.1.3 Micro-synteny plot

#### In true chromosomal length scale

#### In gene number scale

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3.2 Inter-comparing alignment

3.2.1 Dot plot

3.2.2 Parallel-line plot

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3.3 Multiple-species alignment

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4 Clustering analysis

4.1 Clustering plot

4.2 PAR zoom-in plot

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5 VizWGD

5.1 TimeTree plot

5.2 Ultrametic tree plot

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6 Gene Tree – Species Tree Reconciliation